Function reference
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BEMA() - BEMA for the standard spiked covariance model
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NeuroGenesis4 - NeuroGenesis4
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NeuroGenesis4.afterWrap - NeuroGenesis4.afterWrap
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NeuroGenesis4 - NeuroGenesis4.info
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Procrustes() - Procrustes Projection
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SJDScorePlotter() - Plot SJD score
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assemble.byComponent() - Assemble Files Based on Component
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assemble.byDataset() - Assemble files based on Dataset
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balanceData() - Balance Data
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compNameAssign() - Components Name Assignment for concatenate, joint and twoStageLCA analysis
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compNameAssignSep() - Components Name Assignment for Seperate Analysis
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concatICA() - Concatenated decomposition with Independent Component Analysis
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concatNMF() - Concatenated decomposition with Nonnegative Matrix Factorization
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concatPCA() - Concatenated Decomposition with Principal Component Analysis
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configuration_setting_generation() - Configuration for simulated data generation
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datasetNameExtractor() - Dataset Name Extractor
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filterNAValue() - Filter NA Value
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frameToMatrix() - Transform data.frame to matrix
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geneNameAssign() - Gene name assignment
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geneNameExtractor() - Gene Name Extractor
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geneScreen() - Gene Screen
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getMatch() - Species matching function
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groupNameExtractor() - Group Name Extractor
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jointICA() - Joint decomposition with Independent Component Analysis
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jointNMF() - Joint Decomposition with Nonnegative Matrix Factorization
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jointPCA() - Joint Decomposition with Principal Component Analysis
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linkedPCA() - Linked Component Analysis
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marchenko_pastur_quantile() - Quantile for Marchenko Pastur Distribution
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mtx - mtx sequence data
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normalizeData() - Data Normalization
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pveMultiple() - Percentage of Variance Explained for Multiple Data sets
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pveSep() - Percentage of Variance Explained for separate data set
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rebalanceData() - Rebalance Data
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rotate_component() - Simulated Component Rotation
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sampleNameAssign() - Sample Name Assignment for Concatenate, Joint and TwoStageLCA Analysis
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sampleNameAssignSep() - Sample Name Assignment for Seperate Analysis
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sampleNameExtractor() - Sample name extractor
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scoreNameAssign() - Score Name Assignment for Concatenate, Joint and TwoStageLCA Analysis
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scoreNameAssignSep() - Score Name Assign for Seperate Analysis
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score_generation() - Random Score Generation
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sepICA() - Single Data Set Decomposition with Independent Component Analysis
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sepNMF() - Single Data Set Decomposition with Nonnegative Matrix Factorization
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sepPCA() - Single Data Set Decomposition with Principal Component Analysis
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simulated_data_generation() - Simulated Data Generation
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sjdWrap() - SJD Wrap
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sjdWrapProjection() - SJD Wrap for projection
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twoStageLCA() - Two-staged Linked Component Analysis
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twoStageLCA.rank() - Two-staged LCA and automatic rank selection
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twoStageiLCA() - Two-staged Independent Linked Component Analysis
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twoStageiLCA.rank() - Two-staged Independent LCA and automatic rank selection
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weightData() - Weighting Data Set