A list of 4 neuro data sets sampled, containing: Meissner.inVitro.bulk.Hs, LIBD.AZ.inVitro.bulk.Hs, Geschwind.inVivo.sc.Hs, Jabaudon.inVivo.sc.Mm
Usage
data(NeuroGenesis4)Examples
data(NeuroGenesis4)
head(NeuroGenesis4$Meissner.inVitro.bulk.Hs)
#> ESC.1 ESC.2 NE.1 NE.2 ERG.1 ERG.2 MRG.1 MRG.2
#> ACTB 11.89749 12.51971 12.05937 12.12067 11.24872 11.48464 11.35960 11.25400
#> ACTG1 11.43695 11.51078 11.56158 11.78238 11.11370 11.56168 12.03558 11.87872
#> RPS11 11.53765 11.60374 11.60102 12.33705 11.86518 12.27906 11.71387 11.82122
#> RPS27 11.43096 11.84950 11.37940 11.98405 11.72847 12.40359 11.39497 11.57119
#> GAPDH 11.73353 11.58028 11.03214 11.32319 11.67431 11.58769 11.09891 11.27556
#> RPLP1 12.09081 11.31125 11.47262 12.06982 12.24690 12.18691 11.21293 11.48520
#> LRG.1 LRG.2 LRG.3 dNxNE.1 dNxNE.2 dNxERG.1 dNxERG.2
#> ACTB 12.156794 12.48963 12.465039 11.46879 11.31475 11.02878 11.750369
#> ACTG1 11.667384 11.99588 11.682081 11.49894 11.51583 11.40472 11.530689
#> RPS11 10.298831 10.71353 10.050070 10.75485 10.95277 11.18786 10.449705
#> RPS27 9.601159 10.43899 9.891971 10.11305 10.88352 10.61200 10.410837
#> GAPDH 10.178220 10.71438 10.541240 10.15436 10.71084 10.18745 10.737524
#> RPLP1 9.677527 10.31073 9.354940 10.03369 10.13687 10.42048 9.825764
head(NeuroGenesis4$LIBD.AZ.inVitro.bulk.Hs)
#> R16-191_H5TKNBBXX R16-287_H5TKNBBXX R16-197_H5TKNBBXX
#> ENSG00000075624 9.801184 9.126418 10.021148
#> ENSG00000184009 9.911139 9.207879 9.658228
#> ENSG00000142534 9.931604 10.241422 9.863582
#> ENSG00000177954 10.113223 10.131790 10.191365
#> ENSG00000111640 9.899497 9.882258 10.074672
#> ENSG00000137818 7.429230 7.136728 7.089299
#> R16-850_H7V3TBBXX R16-851_H7V3TBBXX R16-288_H5TKNBBXX
#> ENSG00000075624 10.209083 9.879007 9.338096
#> ENSG00000184009 9.833389 9.397213 9.581975
#> ENSG00000142534 9.874257 10.075395 10.074793
#> ENSG00000177954 10.169932 10.379640 9.782648
#> ENSG00000111640 10.667466 10.928845 9.296051
#> ENSG00000137818 7.452889 7.655020 6.797026
#> R16-852_H7V3TBBXX R16-853_H7V3TBBXX R16-854_H7V3TBBXX
#> ENSG00000075624 9.669778 10.252490 9.918732
#> ENSG00000184009 9.425048 10.346642 10.314724
#> ENSG00000142534 10.405406 9.495475 10.031054
#> ENSG00000177954 10.445989 9.573391 9.909319
#> ENSG00000111640 10.722772 10.657020 11.110846
#> ENSG00000137818 7.688916 7.107492 6.556536
#> R16-920_H7V3TBBXX R16-924_H7V3TBBXX R16-922_H7V3TBBXX
#> ENSG00000075624 8.939769 8.819359 8.805412
#> ENSG00000184009 9.394371 9.348358 9.419287
#> ENSG00000142534 8.492300 8.686275 8.961648
#> ENSG00000177954 8.405600 8.836664 9.140308
#> ENSG00000111640 9.214709 9.364195 9.249552
#> ENSG00000137818 5.657866 5.837632 6.051469
#> R16-293_H5TKNBBXX R16-294_H5TKNBBXX R16-698_H7V3JBBXX
#> ENSG00000075624 10.032940 9.140925 10.216037
#> ENSG00000184009 9.780634 9.232892 9.856076
#> ENSG00000142534 9.923666 10.308329 9.621948
#> ENSG00000177954 10.170737 9.705052 10.148344
#> ENSG00000111640 10.282647 9.280183 10.328150
#> ENSG00000137818 6.957712 7.230470 7.884909
head(NeuroGenesis4$Geschwind.inVivo.sc.Hs)
#> TGCTAATACTGA TTCACGATTTTT CTGTCAGAATAA CATAATATGTCA TGCCAATCCGTT
#> ACTB 9.515688 9.903394 11.501196 8.413714 10.082713
#> ACTG1 11.321635 9.097169 11.879592 8.413714 10.082713
#> RPS11 9.515688 10.095851 10.501693 9.411597 9.498415
#> RPS27 10.514703 11.416988 9.181257 10.410538 10.497418
#> GAPDH 8.517658 10.795784 9.181257 10.995147 8.500409
#> RPLP1 9.515688 12.224117 9.765391 9.411597 8.500409
#> TCGACTATTTTG GTTACCCGGCGC GCCACCGATAGC GGGCAGATGTTA TTGAGCGGTACC
#> ACTB 10.706502 0.000000 11.248465 8.817776 0.000000
#> ACTG1 11.706070 10.901656 11.926315 9.816176 10.293077
#> RPS11 11.191682 8.903916 0.000000 8.817776 8.710412
#> RPS27 10.706502 10.486870 10.926685 10.815376 10.707827
#> GAPDH 9.970112 9.902410 9.927426 10.400605 9.708689
#> RPLP1 10.706502 11.486367 9.927426 12.136823 11.029582
#> GAGCGCCCCGAA GTTTTCAGTACA GTGCATATGAGG GCAGTCCGATAA GACGATAGCTGA
#> ACTB 9.921829 10.386717 10.982455 0.000000 10.77000
#> ACTG1 11.505800 10.971320 9.983168 0.000000 9.77083
#> RPS11 10.506296 0.000000 9.983168 10.378064 0.00000
#> RPS27 9.921829 9.387794 10.982455 11.962304 11.35469
#> GAPDH 9.921829 0.000000 0.000000 9.379148 9.77083
#> RPLP1 8.923316 11.386178 10.982455 10.962665 11.76959
head(NeuroGenesis4$Jabaudon.inVivo.sc.Mm)
#> E14.24H_LTHT7_1_1 E14.24H_LTHT7_1_2 E14.24H_LTHT7_1_5 E14.24H_LTHT7_1_6
#> Actb 11.546640 13.065749 10.938384 11.615110
#> Actg1 11.984956 12.085542 11.487611 11.637204
#> Rps11 10.026951 8.523539 10.456390 11.329731
#> Rps27rt 8.849642 7.344095 9.319444 9.010043
#> Rpl3 9.822111 6.697083 9.437030 9.949703
#> Rps19 10.909038 10.577141 10.642986 10.704287
#> E14.24H_LTHT7_1_7 E14.24H_LTHT7_1_12 E14.24H_LTHT7_1_14
#> Actb 10.962733 12.019296 12.340238
#> Actg1 12.882541 12.080589 10.245225
#> Rps11 9.367261 10.228093 9.771756
#> Rps27rt 7.635383 8.787095 9.202543
#> Rpl3 10.077905 9.641796 7.928043
#> Rps19 10.535971 9.729153 10.117179
#> E14.24H_LTHT7_1_16 E14.24H_LTHT7_1_18 E14.24H_LTHT7_1_21
#> Actb 11.480262 12.816242 12.244302
#> Actg1 12.330340 12.334161 12.206212
#> Rps11 10.636815 10.548941 10.666455
#> Rps27rt 8.095319 8.514897 8.283370
#> Rpl3 8.723083 9.899821 9.759426
#> Rps19 10.812065 10.157452 10.410897
#> E14.24H_LTHT7_1_22 E14.24H_LTHT7_1_23 E14.24H_LTHT7_1_26
#> Actb 12.615425 11.146157 11.928714
#> Actg1 12.218000 10.414808 11.971908
#> Rps11 10.161642 10.631020 8.983335
#> Rps27rt 9.405685 8.321047 7.894635
#> Rpl3 9.601033 8.823848 9.069584
#> Rps19 10.068617 10.780560 9.525234
#> E14.24H_LTHT7_1_29 E14.24H_LTHT7_1_30
#> Actb 12.243251 11.909628
#> Actg1 12.430290 12.152783
#> Rps11 11.428630 7.969655
#> Rps27rt 8.544195 6.471227
#> Rpl3 7.742095 9.466134
#> Rps19 10.694148 8.607803