Normalize data to have mean zero and std 1
Usage
normalizeData(
dataset,
enable_normalization = TRUE,
column_sum_normalization = TRUE,
nonnegative_normalization = FALSE
)Arguments
- dataset
The input list of data sets matrix
- enable_normalization
An argument to decide whether to use normalizaiton or not, default is TRUE
- column_sum_normalization
An argument to decide whether to use column sum normalization or not, default it TRUE
- nonnegative_normalization
An argument to decide wehther it is nonnegative matrix factorization based or not, default is FALSE
Examples
dataset = list(
matrix(runif(5000, 1, 2), nrow = 100, ncol = 50),
matrix(runif(5000, 1, 2), nrow = 100, ncol = 50)
)
normalizeData(dataset)
#> [[1]]
#> [,1] [,2] [,3] [,4] [,5]
#> [1,] -2.066163e-03 -2.357473e-03 2.304195e-03 -0.0011178185 -1.318373e-03
#> [2,] 3.058805e-03 -3.394191e-04 -1.822939e-03 -0.0019257850 -1.186391e-03
#> [3,] -1.211755e-03 -2.463441e-03 2.785129e-04 0.0002326911 -9.039193e-05
#> [4,] -2.057233e-03 2.568991e-03 -1.562594e-03 0.0003901390 -1.551080e-03
#> [5,] 3.089355e-03 -2.627042e-03 5.795931e-04 0.0022980377 3.163381e-04
#> [6,] -3.487218e-04 2.645443e-03 -3.375957e-03 -0.0002919085 1.526211e-03
#> [7,] -1.317038e-03 -8.497282e-04 9.784058e-04 -0.0024999333 2.701720e-03
#> [8,] 9.072503e-04 -7.401852e-04 -2.753322e-03 -0.0032509789 2.070827e-03
#> [9,] 1.207117e-03 -1.011820e-03 7.762302e-04 -0.0018736311 -3.586453e-04
#> [10,] 1.368223e-03 -1.060722e-03 -1.094743e-05 0.0009243313 -1.938718e-03
#> [11,] -3.301174e-03 -9.844807e-04 -2.129250e-03 0.0024106981 2.043821e-03
#> [12,] -2.952306e-03 -2.429643e-03 -2.250623e-03 0.0022084395 -2.310075e-03
#> [13,] -1.738195e-03 2.928947e-03 -7.997400e-04 -0.0012193978 -1.081412e-03
#> [14,] -2.146493e-03 -2.442506e-03 1.338692e-04 0.0018272265 -2.004352e-03
#> [15,] 9.291495e-05 1.969047e-03 -6.334310e-04 -0.0010870252 7.477699e-04
#> [16,] -1.268937e-03 -1.882259e-03 -2.686189e-03 0.0020090015 -3.184448e-03
#> [17,] -2.381601e-04 1.439736e-03 -1.530685e-03 -0.0001731476 3.503341e-03
#> [18,] -7.275052e-04 1.161708e-03 2.617775e-03 0.0022216035 6.262105e-04
#> [19,] 2.841270e-04 -5.802288e-04 -7.754484e-04 -0.0013486370 -1.222911e-03
#> [20,] -8.403845e-04 -2.617162e-03 7.672433e-04 -0.0032481497 1.684065e-03
#> [21,] 2.977758e-03 -6.194628e-04 -1.148742e-03 0.0024168305 -2.495446e-03
#> [22,] 2.731947e-04 -1.336390e-03 -1.920570e-03 0.0017057537 -1.233133e-03
#> [23,] -1.484676e-03 4.373080e-04 -2.675185e-03 0.0007576062 -1.392006e-03
#> [24,] -2.115181e-03 -4.463316e-04 -1.453467e-03 0.0007870598 -8.947572e-04
#> [25,] -2.138302e-03 2.247548e-03 1.297813e-03 -0.0009376659 -1.137797e-04
#> [26,] 1.182991e-03 -2.317960e-03 2.343084e-03 0.0009454288 -2.274636e-03
#> [27,] -1.545969e-03 -1.840806e-04 1.917517e-03 -0.0027414217 2.177186e-03
#> [28,] -2.500734e-03 2.447805e-03 2.375813e-04 0.0018917039 1.019577e-04
#> [29,] -1.513043e-03 -1.305026e-03 -1.419194e-03 0.0024049894 -2.881245e-03
#> [30,] 1.925117e-03 2.772362e-03 1.503531e-03 -0.0008079209 3.333852e-03
#> [31,] 5.783442e-05 2.261499e-03 1.750210e-03 0.0033250562 -2.020243e-03
#> [32,] -7.659199e-04 -2.260776e-03 -2.416154e-03 0.0014460977 1.855383e-03
#> [33,] 6.886332e-04 1.625813e-03 -1.673312e-03 0.0026205270 -6.894900e-04
#> [34,] -1.774633e-03 -2.918212e-03 1.659577e-03 0.0026182423 2.806664e-03
#> [35,] -3.582440e-03 3.075397e-04 -4.838013e-04 0.0016773498 -1.553340e-03
#> [36,] 2.667785e-03 2.182410e-03 2.581111e-03 0.0027005485 -2.936041e-03
#> [37,] 2.214263e-03 -1.618287e-03 6.587085e-04 0.0011716037 -2.314547e-03
#> [38,] 9.014674e-04 -1.348021e-03 -7.310398e-04 0.0012358543 3.092149e-03
#> [39,] -3.477758e-03 1.728687e-03 4.188322e-04 -0.0026844347 6.877464e-04
#> [40,] 1.478726e-04 -2.036809e-03 2.091291e-03 -0.0007247048 2.726352e-03
#> [41,] 5.405331e-05 -1.202724e-03 4.601250e-04 -0.0031658908 -2.070612e-03
#> [42,] -4.445460e-04 -2.490286e-03 -2.537393e-03 0.0017725264 -1.523971e-03
#> [43,] -1.804143e-03 -9.956951e-04 2.645665e-03 0.0009770691 -2.687425e-03
#> [44,] 2.890666e-03 2.826482e-03 -1.953524e-03 -0.0025096336 2.370723e-03
#> [45,] 1.251476e-03 2.167407e-03 -1.870907e-03 -0.0018910886 -1.754797e-04
#> [46,] -1.463685e-03 -9.082578e-04 -2.243548e-03 -0.0005683581 -9.133988e-04
#> [47,] 2.200548e-03 -2.859956e-03 -2.260304e-03 -0.0030255481 -3.260772e-03
#> [48,] 2.166227e-03 -2.539226e-03 -1.032981e-03 -0.0010365721 1.292425e-03
#> [49,] -4.719584e-04 2.739490e-03 2.107278e-03 -0.0007876993 1.881225e-03
#> [50,] -4.693826e-04 2.424225e-03 -2.351618e-04 0.0012855559 3.831026e-04
#> [51,] 4.104809e-04 2.871114e-03 2.659774e-03 0.0028293452 1.216369e-03
#> [52,] -1.027595e-03 -1.606882e-03 2.967584e-03 0.0013348949 3.510174e-05
#> [53,] -9.086606e-04 2.918450e-03 -2.982079e-03 -0.0022221185 1.245942e-03
#> [54,] -2.354302e-04 -1.276544e-03 2.264473e-03 0.0019818239 -1.756532e-03
#> [55,] -1.458655e-04 -1.041280e-03 -2.639757e-03 0.0029569601 -4.766277e-04
#> [56,] 1.779982e-03 3.116651e-03 -6.437602e-04 -0.0020242307 4.999339e-04
#> [57,] 2.101647e-03 1.008460e-03 -1.446911e-04 0.0017237619 -2.153501e-03
#> [58,] 1.738058e-03 -1.756267e-03 -1.787152e-03 0.0016658850 -5.506816e-04
#> [59,] 1.332265e-03 -3.368926e-03 1.750375e-03 0.0024872355 2.562212e-03
#> [60,] 1.752786e-03 -1.362273e-03 1.211605e-03 -0.0014453626 -5.655015e-04
#> [61,] -3.016043e-03 2.756816e-03 1.946383e-03 -0.0015186132 1.546939e-03
#> [62,] -1.482112e-03 2.782967e-03 1.350617e-03 -0.0005068187 7.392036e-05
#> [63,] 5.967143e-05 -5.110590e-04 -3.337526e-03 0.0020138643 -3.436591e-03
#> [64,] 2.542349e-03 1.145816e-03 -1.202951e-03 -0.0030819691 -2.890388e-03
#> [65,] -6.380885e-04 7.654042e-04 -3.254968e-03 0.0014211849 3.181618e-03
#> [66,] -6.710071e-06 -7.400011e-04 -8.267024e-04 0.0002814192 -2.660606e-03
#> [67,] -1.200844e-03 4.032515e-04 -1.384152e-03 0.0005002922 7.893250e-04
#> [68,] 2.742499e-03 -2.277967e-03 -9.433775e-04 -0.0032583881 1.618574e-03
#> [69,] -2.135509e-03 9.832670e-04 -1.142626e-03 0.0009230831 -3.067220e-03
#> [70,] -2.878364e-03 -8.217225e-05 -2.860524e-03 0.0012787015 8.075187e-04
#> [71,] -2.469426e-03 -1.051355e-03 1.514425e-03 -0.0025565857 7.687499e-04
#> [72,] -1.866513e-03 2.889166e-03 -2.701712e-03 0.0034641729 -2.463961e-03
#> [73,] 8.294830e-04 1.240959e-03 1.813123e-03 0.0020759393 1.302646e-03
#> [74,] -6.588331e-04 -2.498819e-04 -1.266172e-05 -0.0005863816 -1.422994e-03
#> [75,] -1.418279e-03 1.110418e-03 -3.870649e-04 -0.0030855919 -2.688376e-03
#> [76,] 2.497123e-03 7.227492e-04 -1.176934e-03 -0.0008912271 2.777643e-03
#> [77,] -2.533379e-03 1.096356e-03 3.719553e-03 0.0012689098 -4.406405e-04
#> [78,] 2.199641e-03 -1.815316e-03 9.396088e-04 -0.0021250875 1.924531e-03
#> [79,] 1.630701e-03 2.561211e-03 -2.787073e-03 0.0022763762 1.227866e-03
#> [80,] -6.903895e-04 -3.426725e-03 -1.215437e-03 0.0010421859 -2.924775e-03
#> [81,] 1.845614e-03 -1.594282e-03 1.093329e-03 -0.0026082849 -1.522500e-03
#> [82,] -1.194453e-03 2.732754e-03 9.730626e-04 0.0005651895 -2.146872e-03
#> [83,] 2.588171e-03 1.421395e-03 -2.420371e-03 -0.0005625755 -2.684381e-03
#> [84,] -1.058454e-03 6.439736e-04 9.965760e-04 -0.0018029387 -7.721375e-04
#> [85,] 2.203358e-03 1.260281e-04 8.307001e-04 0.0018970939 -1.713763e-03
#> [86,] 2.005075e-04 2.556697e-03 1.436212e-03 -0.0008806473 -1.557320e-03
#> [87,] -1.867494e-03 -2.613365e-03 -2.225435e-03 0.0027907956 3.400064e-03
#> [88,] 2.260067e-03 -1.741603e-03 -8.906033e-04 0.0029703641 -2.910330e-03
#> [89,] 1.354728e-03 2.886484e-03 2.139108e-03 0.0026032480 -2.893413e-04
#> [90,] -2.047804e-03 -2.171479e-03 4.217990e-04 -0.0022939596 -1.526037e-03
#> [91,] -6.559534e-04 -7.604424e-04 -1.858503e-03 -0.0020102445 3.359955e-03
#> [92,] 1.941001e-03 -8.104962e-04 1.174285e-03 -0.0018022704 -7.551628e-04
#> [93,] -1.040639e-03 -2.879320e-03 2.160570e-03 -0.0028527161 2.723131e-03
#> [94,] 2.106056e-05 1.044865e-03 -3.131436e-03 0.0021368600 1.718890e-03
#> [95,] 1.736076e-03 -2.379552e-03 1.850825e-03 0.0025357139 -5.811280e-04
#> [96,] 1.098437e-03 -1.592825e-03 1.139288e-03 0.0013218477 -8.984924e-04
#> [97,] 9.629001e-04 -1.754308e-03 3.641435e-03 0.0010153214 -1.791899e-03
#> [98,] -1.017875e-03 2.352153e-03 -1.731464e-03 -0.0012978078 8.761178e-04
#> [99,] -1.027439e-03 7.426732e-04 2.494726e-04 0.0033323050 8.232932e-05
#> [100,] 1.247029e-03 2.752459e-03 -1.803439e-03 0.0029944097 2.197050e-03
#> [,6] [,7] [,8] [,9] [,10]
#> [1,] 0.0010683833 -1.124879e-03 -8.135608e-04 1.110067e-03 1.241849e-03
#> [2,] -0.0021876119 -1.945022e-03 -1.588749e-04 -2.181751e-03 -9.143642e-05
#> [3,] -0.0005331570 -2.920424e-03 1.376691e-04 1.159139e-03 7.203111e-04
#> [4,] 0.0019854824 -3.015183e-04 2.404232e-03 2.092683e-03 1.327323e-03
#> [5,] 0.0011199363 2.804728e-04 -2.572983e-03 1.942079e-03 2.325341e-03
#> [6,] -0.0013690009 -6.461586e-04 -1.798417e-04 -1.512690e-03 9.478265e-04
#> [7,] 0.0031439582 2.721666e-03 2.285426e-04 1.812914e-03 2.210312e-03
#> [8,] -0.0026346021 -1.149740e-03 1.811927e-03 -2.545503e-03 1.880080e-03
#> [9,] -0.0002213227 4.262535e-04 -2.302995e-03 4.805856e-04 1.643360e-03
#> [10,] 0.0006312243 -1.701828e-03 -3.234006e-03 -1.153583e-03 2.184232e-03
#> [11,] -0.0023990848 -9.023922e-05 2.548455e-03 -1.445569e-03 1.099088e-03
#> [12,] 0.0001203957 -1.511377e-03 -1.397424e-03 -4.452686e-04 4.452890e-04
#> [13,] -0.0026494335 5.037450e-05 -2.803043e-03 2.227667e-03 1.834003e-03
#> [14,] -0.0015537377 1.543303e-03 -1.362351e-03 7.579272e-04 -2.474257e-03
#> [15,] 0.0021361753 -2.751933e-03 2.671513e-03 -1.506118e-03 -6.702421e-04
#> [16,] 0.0019463660 -1.085385e-03 1.577155e-03 1.338898e-03 4.510920e-04
#> [17,] -0.0025857820 -1.292214e-03 -1.331136e-03 -4.980096e-04 -1.067899e-03
#> [18,] 0.0007735083 1.325938e-03 -9.169159e-04 -9.692653e-04 -2.166142e-03
#> [19,] 0.0022191355 2.078255e-03 1.726161e-03 1.578240e-03 2.797047e-04
#> [20,] -0.0015990961 2.911321e-03 5.511197e-04 -3.158361e-03 1.393190e-03
#> [21,] 0.0007979407 1.087420e-03 -1.255116e-03 -2.311302e-03 -2.542320e-03
#> [22,] -0.0029602858 -3.644767e-04 3.612357e-03 2.030658e-03 2.016122e-03
#> [23,] 0.0027332234 -1.855255e-03 2.157155e-03 -1.961544e-05 -4.681763e-04
#> [24,] 0.0010247522 1.339298e-04 2.079895e-03 1.253099e-03 3.717170e-04
#> [25,] 0.0004958980 3.145468e-03 1.463715e-03 -1.232200e-03 -1.912728e-03
#> [26,] -0.0022111066 3.903557e-04 -1.472129e-03 1.289594e-03 1.618141e-03
#> [27,] 0.0007439849 -1.883593e-04 -1.407197e-03 3.440013e-04 1.406038e-03
#> [28,] 0.0015707252 2.868634e-03 1.730833e-03 -1.502526e-03 -6.281448e-04
#> [29,] -0.0031956729 2.775130e-03 -2.470877e-03 -1.100586e-03 -2.074454e-03
#> [30,] 0.0009347714 -1.113151e-03 1.488169e-03 1.424223e-03 2.719381e-03
#> [31,] -0.0006936697 1.414215e-03 -2.018331e-03 -2.156955e-03 -4.092237e-04
#> [32,] -0.0002285671 3.136210e-03 8.410399e-04 -2.680466e-03 -6.583184e-04
#> [33,] -0.0023917132 -1.312258e-03 2.968007e-03 2.838452e-03 -1.864673e-03
#> [34,] 0.0021451675 3.165592e-03 -1.368912e-03 -2.988045e-04 -1.684538e-03
#> [35,] -0.0022031332 4.481760e-04 1.871277e-03 1.410951e-03 -1.337139e-03
#> [36,] 0.0007993855 -2.400985e-03 -4.273325e-04 -1.615871e-03 1.540389e-03
#> [37,] 0.0031049504 -1.125891e-03 -3.000077e-03 2.457067e-03 2.050104e-03
#> [38,] -0.0022420686 -1.950495e-03 1.845694e-03 8.487346e-04 -2.114151e-03
#> [39,] 0.0003419552 2.479261e-03 -2.384221e-03 -2.447203e-03 2.041855e-03
#> [40,] 0.0003089363 2.863566e-03 -3.453658e-03 4.399558e-04 -1.159613e-03
#> [41,] -0.0005566503 1.510882e-03 2.458486e-03 2.534870e-03 1.629702e-03
#> [42,] 0.0021470258 -1.894533e-03 3.105080e-03 2.916039e-04 -2.750504e-03
#> [43,] -0.0011272838 -3.076932e-04 -1.320033e-03 1.554034e-03 1.752882e-03
#> [44,] -0.0033656168 -1.013499e-04 -2.329704e-03 -3.380924e-03 -2.490098e-03
#> [45,] 0.0019296232 -5.826925e-04 -8.118875e-04 -1.159856e-03 1.345772e-03
#> [46,] -0.0022930360 9.447252e-04 -1.317775e-03 2.461455e-03 1.003956e-03
#> [47,] -0.0025603883 8.307204e-04 9.238707e-05 -6.004917e-05 -6.247164e-04
#> [48,] -0.0008785644 -3.167765e-04 3.577742e-04 1.561476e-03 2.344837e-05
#> [49,] -0.0002640412 -6.317400e-04 7.522162e-05 8.053529e-04 9.585668e-04
#> [50,] 0.0001193208 -2.736280e-03 -1.257325e-03 1.065315e-03 5.673359e-04
#> [51,] 0.0011360307 7.560993e-04 2.547374e-03 -2.739218e-03 1.832765e-03
#> [52,] 0.0017781236 4.721576e-04 -3.463364e-03 2.341311e-03 2.103162e-03
#> [53,] 0.0031114852 2.593353e-04 -4.586785e-04 -2.007762e-03 -1.559581e-04
#> [54,] 0.0026782440 1.147789e-03 1.439369e-03 -2.883990e-03 -2.679204e-03
#> [55,] 0.0036119744 -4.654454e-04 -2.488299e-03 -2.477496e-03 -2.401899e-03
#> [56,] -0.0012102154 -2.334127e-03 3.122014e-03 -1.412597e-03 3.825804e-03
#> [57,] 0.0018326234 1.727308e-03 3.073254e-03 3.341727e-03 3.079961e-03
#> [58,] -0.0024639538 2.222017e-03 1.430914e-03 6.394672e-04 -1.955847e-03
#> [59,] 0.0005918525 6.737874e-04 8.265929e-04 -2.731939e-03 2.019016e-03
#> [60,] 0.0012928785 -7.812072e-05 -6.236398e-04 6.842548e-04 1.231185e-03
#> [61,] -0.0010486047 1.431601e-03 1.972265e-03 -2.944478e-03 -2.444502e-04
#> [62,] 0.0003615928 -2.427737e-03 1.400103e-03 2.232836e-03 3.005590e-03
#> [63,] -0.0027183056 -1.943545e-03 -1.201220e-04 -3.024181e-03 -1.661781e-03
#> [64,] -0.0006206985 3.815239e-04 -2.621608e-03 1.208558e-03 -1.921469e-03
#> [65,] 0.0006126028 -1.973807e-03 1.216833e-03 -3.205374e-03 -1.992947e-03
#> [66,] -0.0001552911 -3.278260e-03 -1.375022e-03 9.086023e-04 -1.315416e-03
#> [67,] -0.0015662641 9.702159e-05 -2.023091e-03 1.837498e-03 -1.310364e-03
#> [68,] -0.0020360380 2.005669e-04 -8.119352e-04 2.604555e-03 -1.145181e-04
#> [69,] -0.0006478187 -8.896309e-04 2.867393e-03 -1.387270e-04 -2.523950e-03
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